DNA sequence comparison - Revision history

Michael at 19:39, 11 October 2023

2023-10-11T19:39:08Z

2018-07-03T08:46:17Z

Nomenclature: FASTA + FASTQ

← Older revision		Revision as of 08:46, 3 July 2018
Line 4:		Line 4:
	==Nomenclature==		==Nomenclature==
	This is still somewhat in flux.<ref name=pmid17251329>{{cite journal \|author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB \|title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges \|journal=J Mol Diagn \|volume=9 \|issue=1 \|pages=1–6 \|year=2007 \|month=February \|pmid=17251329 \|pmc=1867422 \|doi=10.2353/jmoldx.2007.060081 \|url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref>		This is still somewhat in flux.<ref name=pmid17251329>{{cite journal \|author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB \|title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges \|journal=J Mol Diagn \|volume=9 \|issue=1 \|pages=1–6 \|year=2007 \|month=February \|pmid=17251329 \|pmc=1867422 \|doi=10.2353/jmoldx.2007.060081 \|url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref>

			==Data format==
			'''FASTA''': This contains just DNA sequence. The first line starts with '>' and contains the record name.

			'''FASTQ''': This contains DNA sequence data with quality scores: The quality scores are indicated by defined characters.

	==Basic local alignment search tool==		==Basic local alignment search tool==

2015-09-19T19:02:04Z

← Older revision		Revision as of 19:02, 19 September 2015
Line 1:		Line 1:
	'''DNA sequence comparison''' is component of [[molecular pathology]].		'''DNA sequence comparison''' is component of [[molecular pathology]].

			''DNA sequencing'' redirect here.
	==Nomenclature==		==Nomenclature==
	This is still somewhat in flux.<ref name=pmid17251329>{{cite journal \|author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB \|title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges \|journal=J Mol Diagn \|volume=9 \|issue=1 \|pages=1–6 \|year=2007 \|month=February \|pmid=17251329 \|pmc=1867422 \|doi=10.2353/jmoldx.2007.060081 \|url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref>		This is still somewhat in flux.<ref name=pmid17251329>{{cite journal \|author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB \|title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges \|journal=J Mol Diagn \|volume=9 \|issue=1 \|pages=1–6 \|year=2007 \|month=February \|pmid=17251329 \|pmc=1867422 \|doi=10.2353/jmoldx.2007.060081 \|url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref>

2012-03-04T13:20:26Z

2012-02-28T05:16:36Z

redirect

2011-05-05T15:59:33Z

External links: +ref

2011-05-05T15:58:59Z

← Older revision		Revision as of 15:58, 5 May 2011
Line 1:		Line 1:
	'''DNA sequence comparison''' is component of [[molecular pathology]].		'''DNA sequence comparison''' is component of [[molecular pathology]].

			==Nomenclature==
			This is still somewhat in flux.<ref name=pmid17251329>{{cite journal \|author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB \|title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges \|journal=J Mol Diagn \|volume=9 \|issue=1 \|pages=1–6 \|year=2007 \|month=February \|pmid=17251329 \|pmc=1867422 \|doi=10.2353/jmoldx.2007.060081 \|url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref>

	==Basic local alignment search tool==		==Basic local alignment search tool==

2011-05-05T15:23:40Z

Using BLAST

← Older revision		Revision as of 15:23, 5 May 2011
Line 7:		Line 7:
	#Go to BLAST web site ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ).		#Go to BLAST web site ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ).
	#Enter sequence.		#Enter sequence.
	#Enter consensus sequence.		#Enter consensus sequence (can be found with [[OMIM]]).
	#Hit enter.		#Hit enter.

2011-05-05T15:22:26Z

← Older revision		Revision as of 15:22, 5 May 2011
Line 1:		Line 1:
	'''DNA sequence comparison''' is component of [[molecular pathology]].		'''DNA sequence comparison''' is component of [[molecular pathology]].

	==Using BLAST==		==Basic local alignment search tool==
			*[[AKA]] BLAST.

			===Using BLAST===
	#Go to BLAST web site ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ).		#Go to BLAST web site ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ).
	#Enter sequence.		#Enter sequence.
Line 12:		Line 15:
	==External links==		==External links==
	*[http://www.sanger.ac.uk/resources/software/act/ Artemis Comparison Tool (ACT) - a GPL'ed sequence comparison tool (sanger.ac.uk)].		*[http://www.sanger.ac.uk/resources/software/act/ Artemis Comparison Tool (ACT) - a GPL'ed sequence comparison tool (sanger.ac.uk)].
			*[http://en.wikipedia.org/wiki/List_of_sequence_alignment_software List of sequence alignment software (WP)].
	*[http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST - sequence comparison tool (ncbi.nlm.nih.gov)].		*[http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST - sequence comparison tool (ncbi.nlm.nih.gov)].

	[[Category:Molecular pathology]]		[[Category:Molecular pathology]]

2011-05-05T15:05:51Z

fix typo

← Older revision		Revision as of 15:05, 5 May 2011
Line 11:		Line 11:

	==External links==		==External links==
	*[http://www.sanger.ac.uk/resources/software/act/ Artemis Comparison Tool		*[http://www.sanger.ac.uk/resources/software/act/ Artemis Comparison Tool (ACT) - a GPL'ed sequence comparison tool (sanger.ac.uk)].
	(ACT) - a GPL'ed sequence comparison tool (sanger.ac.uk)].
	*[http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST - sequence comparison tool (ncbi.nlm.nih.gov)].		*[http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST - sequence comparison tool (ncbi.nlm.nih.gov)].

	[[Category:Molecular pathology]]		[[Category:Molecular pathology]]